Index

A

alignTraj() (dynetan.proctraj.DNAproc method) atm_to_node_dist() (in module dynetan.contact)

atm_to_node_dist_par() (in module dynetan.contact) atm_to_node_dist_proc() (in module dynetan.contact)

C

calc_cor_proc() (in module dynetan.gencor) calc_distances() (in module dynetan.contact) calc_mir_numba_2var() (in module dynetan.gencor) calcBetween() (dynetan.proctraj.DNAproc method) calcBetweenPar() (in module dynetan.network) calcCartesian() (dynetan.proctraj.DNAproc method) calcCommunities() (dynetan.proctraj.DNAproc method)

calcCor() (dynetan.proctraj.DNAproc method) calcEigenCentral() (dynetan.proctraj.DNAproc method) calcGraphInfo() (dynetan.proctraj.DNAproc method) calcOptPathPar() (in module dynetan.network) calcOptPaths() (dynetan.proctraj.DNAproc method) checkContactMat() (dynetan.proctraj.DNAproc method) checkSystem() (dynetan.proctraj.DNAproc method)

D

diagnostic() (in module dynetan.toolkit) dist_to_contact() (in module dynetan.contact) dist_to_contact_par() (in module dynetan.contact) dist_to_contact_proc() (in module dynetan.contact) DNAdata (class in dynetan.datastorage) DNAproc (class in dynetan.proctraj) dynetan.contact module dynetan.datastorage module

dynetan.gencor module dynetan.network module dynetan.proctraj module dynetan.toolkit module dynetan.viz module

F

filterContacts() (dynetan.proctraj.DNAproc method)

findContacts() (dynetan.proctraj.DNAproc method) formatNodeGroups() (in module dynetan.toolkit)

G

get_contacts_c() (in module dynetan.contact) get_lin_index_numba() (in module dynetan.contact) getCartDist() (in module dynetan.toolkit) getCommunityColors() (in module dynetan.viz) getDegreeDict() (dynetan.proctraj.DNAproc method) getLinIndexC() (in module dynetan.toolkit)

getNGLSelFromNode() (in module dynetan.toolkit) getNodeFromSel() (in module dynetan.toolkit) getPath() (dynetan.proctraj.DNAproc method) (in module dynetan.toolkit) getSelFromNode() (in module dynetan.toolkit) getU() (dynetan.proctraj.DNAproc method)

I

interfaceAnalysis() (dynetan.proctraj.DNAproc method)

L

loadFromFile() (dynetan.datastorage.DNAdata method)

loadSystem() (dynetan.proctraj.DNAproc method)

M

mir_to_corr() (in module dynetan.gencor) module dynetan.contact dynetan.datastorage dynetan.gencor dynetan.network dynetan.proctraj dynetan.toolkit dynetan.viz

P

prep_mi_c() (in module dynetan.gencor) prep_node_groups() (dynetan.proctraj.DNAproc method)

prepareNetwork() (dynetan.proctraj.DNAproc method) prepTclViz() (in module dynetan.viz)

S

saveData() (dynetan.proctraj.DNAproc method) saveReducedTraj() (dynetan.proctraj.DNAproc method) saveToFile() (dynetan.datastorage.DNAdata method) selectSystem() (dynetan.proctraj.DNAproc method) setContactPersistence() (dynetan.proctraj.DNAproc method) setCustomResNodes() (dynetan.proctraj.DNAproc method) setCutoffDist() (dynetan.proctraj.DNAproc method) setDistanceMode() (dynetan.proctraj.DNAproc method) seth2oName() (dynetan.proctraj.DNAproc method) setNodeGroups() (dynetan.proctraj.DNAproc method)

setNumSampledFrames() (dynetan.proctraj.DNAproc method) setNumWinds() (dynetan.proctraj.DNAproc method) setSegIDs() (dynetan.proctraj.DNAproc method) setSolvNames() (dynetan.proctraj.DNAproc method) showCommunityByID() (in module dynetan.viz) showCommunityByNodes() (in module dynetan.viz) showCommunityByTarget() (in module dynetan.viz) showCommunityGlobal() (in module dynetan.viz) showNodeGroups() (in module dynetan.toolkit) stand_vars_c() (in module dynetan.gencor)

V

viewPath() (in module dynetan.viz)